Data availabilityThe genome assemblies and corresponding gene annotation results, raw sequencing datasets of US56-14-4, 10-9201, 10-9208 and the other six F1 hybrids have been deposited at the Genome Sequence Archive (GSA) database71 in the National Genomics Data Center, Beijing Institute of Genomics (BIG), Chinese Academy of Sciences and China National Center for Bioinformation (CNCB), under accession numbers PRJCA032574 (CRA020620 and CRA022922). The LA Purple genome is available from CNCB Genome Warehouse under accession GWHHOJF00000000.1. The raw sequencing fastq data of LA Purple are available from CNCB BioProject accession PRJCA039904.Code availabilityThe code of an algorithm KLASSIFY that classify chimeric reads and identify breakpoints is available on GitHub https://github.com/tanghaibao/klassify (including full simulation and evaluation scripts with exact parameters, random seeds and example commands) and the code is archived on Zenodo at https://doi.org/10.5281/zenodo.20838810 (v0.1.6)72.ReferencesBremer, G. A cytological investigation of some species and species-hybrids of the genus Saccharum. Genetica 5, 273–326 (1923).Article
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