Last Tuesday at 3am, a multi-agent loop hit 12K KV writes/minute and froze. The loop was a one-line counter bug. That part was fixable. What I found while tracing it was worse.
I had --dangerously-skip-permissions enabled on a Claude Code session that was running D1 migrations. I thought it was pointing at staging. It wasn't — I'd misconfigured my env file reference, loading .env.production instead of .dev.vars. Claude didn't ask. The flag told it not to. The migration was ADD COLUMN, not DROP COLUMN, so no data loss. Survivable. But only barely.
The thing I got wrong: I treated --dangerously-skip-permissions as "skip the annoying confirmation popups." It's actually "remove the only moment a human sees what command is about to run." Those are very different things. Turning the flag back off helps, but it doesn't constrain what Claude attempts — it just adds a prompt you'll click through anyway at 3am.
What actually worked was adding a deny rule in .claude/settings.json:
{
