Small-cap stocks may be outperforming Wall Street's largest companies in 2026, but Wells Fargo Investment Institute believes the rally could be masking deeper weaknesses underneath the surface. This warning may be carrying growing implications for investors rotating into small-cap ETFs.

The Russell 2000 index has gained more than 17.7% so far this year, outperforming the S&P 500's 10% advance. The move has fueled renewed interest in small-cap ETFs such as iShares Russell 2000 ETF (NYSE:IWM), Vanguard Small-Cap Index Fund ETF (NYSE:VB) and iShares Core S&P Small-Cap ETF (NYSE:IJR) as investors increasingly bet that the market rally is broadening beyond mega-cap technology stocks.

However, MarketWatch reported that according to the institute, the recent momentum in small caps appeared disconnected from weakening underlying fundamentals, including deteriorating earnings expectations, lower profitability and elevated debt burdens.

The warning arrives at a time when ETF flows suggest investors are becoming more selective within the small-cap space rather than broadly embracing the rally.

While the broad-market IWM has suffered more than $8 billion in net outflows so far this year, the more quality-focused IJR has attracted roughly $2 billion in inflows, signaling that investors may be gravitating toward profitable small-cap companies instead of speculative broad-beta exposure.